Detailed information of SNP:
|
SNP ID:
sf0222729153(Gbrowse)
Chromosome: chr02 Position: 22729153 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1148 | 95.21% | 4.79% |
| All Indica | 552 | 91.12% | 8.88% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 53 | 92.45% | 7.55% |
| Indica I | 221 | 88.24% | 11.76% |
| Indica II | 173 | 93.64% | 6.36% |
| Indica Intermediate | 158 | 92.41% | 7.59% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 35 | 94.29% | 5.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222729153 | A->C | INTERGENIC | None |