Detailed information of SNP:
|
SNP ID:
sf0222729186(Gbrowse)
Chromosome: chr02 Position: 22729186 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 60.03% | 39.97% |
| All Indica | 793 | 38.97% | 61.03% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 370 | 22.97% | 77.03% |
| Indica II | 213 | 61.50% | 38.50% |
| Indica Intermediate | 210 | 44.29% | 55.71% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222729186 | G->T | INTERGENIC | None |