Detailed information of SNP:
|
SNP ID:
sf0222729829(Gbrowse)
Chromosome: chr02 Position: 22729829 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1401 | 57.17% | 42.83% |
| All Indica | 791 | 35.27% | 64.73% |
| All Japonica | 487 | 99.18% | 0.82% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 18.40% | 81.60% |
| Indica II | 208 | 60.10% | 39.90% |
| Indica Intermediate | 208 | 40.87% | 59.13% |
| Temperate Japonica | 327 | 99.69% | 0.31% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222729829 | A->C | INTERGENIC | None |