Detailed information of SNP:
|
SNP ID:
sf0222732099(Gbrowse)
Chromosome: chr02 Position: 22732099 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 56.33% | 43.67% |
| All Indica | 796 | 34.92% | 65.08% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 374 | 18.72% | 81.28% |
| Indica II | 213 | 60.09% | 39.91% |
| Indica Intermediate | 209 | 38.28% | 61.72% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222732099 | T->C | LOC_Os02g37680(LOC_Os02g37680.1) | Non-Synonymous SNP |