Detailed information of SNP:



SNP ID: sf0222732169(Gbrowse)

Chromosome: chr02

Position: 22732169
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1417 60.83% 39.17%
All Indica797 36.64% 63.36%
All Japonica497 99.40% 0.60%
Aus67 53.73% 46.27%
Indica I375 19.20% 80.80%
Indica II212 62.26% 37.74%
Indica Intermediate210 41.90% 58.10%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 96.81% 3.19%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 78.57% 21.43%
Intermediate42 69.05% 30.95%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0222732169 G->A LOC_Os02g37680(LOC_Os02g37680.1) INTRON