Detailed information of SNP:
|
SNP ID:
sf0222736277(Gbrowse)
Chromosome: chr02 Position: 22736277 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 57.27% | 42.73% |
| All Indica | 796 | 35.18% | 64.82% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 17.60% | 82.40% |
| Indica II | 212 | 60.85% | 39.15% |
| Indica Intermediate | 209 | 40.67% | 59.33% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222736277 | C->T | LOC_Os02g37690(LOC_Os02g37690.1) | Non-Synonymous SNP |