Detailed information of SNP:
|
SNP ID:
sf0222736344(Gbrowse)
Chromosome: chr02 Position: 22736344 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 57.48% | 42.52% |
| All Indica | 798 | 35.34% | 64.66% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 18.13% | 81.87% |
| Indica II | 213 | 60.56% | 39.44% |
| Indica Intermediate | 210 | 40.48% | 59.52% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222736344 | A->C | LOC_Os02g37690(LOC_Os02g37690.1) | Synonymous |