Detailed information of SNP:
|
SNP ID:
sf0222739468(Gbrowse)
Chromosome: chr02 Position: 22739468 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 56.06% | 43.94% |
| All Indica | 799 | 34.92% | 65.08% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 18.13% | 81.87% |
| Indica II | 213 | 61.03% | 38.97% |
| Indica Intermediate | 211 | 38.39% | 61.61% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222739468 | C->A | LOC_Os02g37694(LOC_Os02g37694.1) | UTR_3_PRIME |