Detailed information of SNP:
|
SNP ID:
sf0222740317(Gbrowse)
Chromosome: chr02 Position: 22740317 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 57.79% | 42.21% |
| All Indica | 799 | 35.79% | 64.21% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 18.67% | 81.33% |
| Indica II | 213 | 61.03% | 38.97% |
| Indica Intermediate | 211 | 40.76% | 59.24% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222740317 | T->C | LOC_Os02g37694(LOC_Os02g37694.1) | UTR_3_PRIME |