Detailed information of SNP:
|
SNP ID:
sf0222741310(Gbrowse)
Chromosome: chr02 Position: 22741310 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 56.38% | 43.62% |
| All Indica | 799 | 33.92% | 66.08% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 17.60% | 82.40% |
| Indica II | 213 | 59.15% | 40.85% |
| Indica Intermediate | 211 | 37.44% | 62.56% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222741310 | G->C | INTERGENIC | None |