Detailed information of SNP:
|
SNP ID:
sf0222745367(Gbrowse)
Chromosome: chr02 Position: 22745367 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1385 | 89.60% | 10.40% |
| All Indica | 765 | 82.09% | 17.91% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 352 | 71.88% | 28.12% |
| Indica II | 208 | 89.90% | 10.10% |
| Indica Intermediate | 205 | 91.71% | 8.29% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222745367 | C->T | INTERGENIC | None |