Detailed information of SNP:
|
SNP ID:
sf0222746254(Gbrowse)
Chromosome: chr02 Position: 22746254 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 52.96% | 47.04% |
| All Indica | 798 | 27.94% | 72.06% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 18.13% | 81.87% |
| Indica II | 213 | 38.03% | 61.97% |
| Indica Intermediate | 210 | 35.24% | 64.76% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222746254 | C->A | INTERGENIC | None |