Detailed information of SNP:
|
SNP ID:
sf0222746878(Gbrowse)
Chromosome: chr02 Position: 22746878 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 53.78% | 46.22% |
| All Indica | 795 | 28.68% | 71.32% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 372 | 19.62% | 80.38% |
| Indica II | 212 | 37.74% | 62.26% |
| Indica Intermediate | 211 | 35.55% | 64.45% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222746878 | A->G | INTERGENIC | None |