Detailed information of SNP:
|
SNP ID:
sf0222759501(Gbrowse)
Chromosome: chr02 Position: 22759501 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1387 | 83.49% | 16.51% |
| All Indica | 776 | 73.58% | 26.42% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 58 | 70.69% | 29.31% |
| Indica I | 365 | 74.25% | 25.75% |
| Indica II | 208 | 71.63% | 28.37% |
| Indica Intermediate | 203 | 74.38% | 25.62% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222759501 | T->G | INTERGENIC | None |