Detailed information of SNP:
|
SNP ID:
sf0222772450(Gbrowse)
Chromosome: chr02 Position: 22772450 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 85.16% | 14.84% |
| All Indica | 798 | 89.22% | 10.78% |
| All Japonica | 494 | 79.55% | 20.45% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 86.67% | 13.33% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 83.33% | 16.67% |
| Temperate Japonica | 332 | 87.65% | 12.35% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 68 | 55.88% | 44.12% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222772450 | A->G | LOC_Os02g37750(LOC_Os02g37750.1) | Non-Synonymous SNP |