Detailed information of SNP:
|
SNP ID:
sf0222772977(Gbrowse)
Chromosome: chr02 Position: 22772977 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1312 | 92.15% | 7.85% |
| All Indica | 753 | 99.20% | 0.80% |
| All Japonica | 451 | 79.16% | 20.84% |
| Aus | 57 | 100.00% | 0.00% |
| Indica I | 353 | 98.87% | 1.13% |
| Indica II | 202 | 100.00% | 0.00% |
| Indica Intermediate | 198 | 98.99% | 1.01% |
| Temperate Japonica | 300 | 72.00% | 28.00% |
| Tropical Japonica | 88 | 98.86% | 1.14% |
| Japonica Intermediate | 63 | 85.71% | 14.29% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 38 | 92.11% | 7.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222772977 | C->G | INTERGENIC | None |