Detailed information of SNP:
|
SNP ID:
sf0222791735(Gbrowse)
Chromosome: chr02 Position: 22791735 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1372 | 76.75% | 23.25% |
| All Indica | 762 | 66.54% | 33.46% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 62 | 20.97% | 79.03% |
| Indica I | 361 | 68.14% | 31.86% |
| Indica II | 206 | 67.96% | 32.04% |
| Indica Intermediate | 195 | 62.05% | 37.95% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 11 | 90.91% | 9.09% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222791735 | T->C | LOC_Os02g37790(LOC_Os02g37790.1) | Non-Synonymous SNP |