Detailed information of SNP:



SNP ID: sf0222791735(Gbrowse)

Chromosome: chr02

Position: 22791735
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1372 76.75% 23.25%
All Indica762 66.54% 33.46%
All Japonica496 99.19% 0.81%
Aus62 20.97% 79.03%
Indica I361 68.14% 31.86%
Indica II206 67.96% 32.04%
Indica Intermediate195 62.05% 37.95%
Temperate Japonica334 99.40% 0.60%
Tropical Japonica94 98.94% 1.06%
Japonica Intermediate68 98.53% 1.47%
Group VI/Aromatic11 90.91% 9.09%
Intermediate41 75.61% 24.39%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0222791735 T->C LOC_Os02g37790(LOC_Os02g37790.1) Non-Synonymous SNP