Detailed information of SNP:



SNP ID: sf0222792788(Gbrowse)

Chromosome: chr02

Position: 22792788
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1382 84.23% 15.77%
All Indica770 75.19% 24.81%
All Japonica497 100.00% 0.00%
Aus60 61.67% 38.33%
Indica I362 78.73% 21.27%
Indica II206 75.73% 24.27%
Indica Intermediate202 68.32% 31.68%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 90.24% 9.76%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0222792788 C->T LOC_Os02g37790(LOC_Os02g37790.1) Non-Synonymous SNP