Detailed information of SNP:
|
SNP ID:
sf0222793132(Gbrowse)
Chromosome: chr02 Position: 22793132 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 84.75% | 15.25% |
| All Indica | 781 | 77.21% | 22.79% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 63 | 58.73% | 41.27% |
| Indica I | 368 | 77.45% | 22.55% |
| Indica II | 205 | 79.51% | 20.49% |
| Indica Intermediate | 208 | 74.52% | 25.48% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222793132 | C->T | INTERGENIC | None |