Detailed information of SNP:
|
SNP ID:
sf0222793215(Gbrowse)
Chromosome: chr02 Position: 22793215 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1386 | 88.53% | 11.47% |
| All Indica | 770 | 82.99% | 17.01% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 64 | 62.50% | 37.50% |
| Indica I | 357 | 82.91% | 17.09% |
| Indica II | 208 | 84.62% | 15.38% |
| Indica Intermediate | 205 | 81.46% | 18.54% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222793215 | A->G | INTERGENIC | None |