Detailed information of SNP:
|
SNP ID:
sf0222793502(Gbrowse)
Chromosome: chr02 Position: 22793502 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 86.50% | 13.50% |
| All Indica | 785 | 79.75% | 20.25% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 62 | 61.29% | 38.71% |
| Indica I | 369 | 80.76% | 19.24% |
| Indica II | 207 | 82.61% | 17.39% |
| Indica Intermediate | 209 | 75.12% | 24.88% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222793502 | C->A | INTERGENIC | None |