Detailed information of SNP:
|
SNP ID:
sf0222793516(Gbrowse)
Chromosome: chr02 Position: 22793516 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1394 | 82.57% | 17.43% |
| All Indica | 778 | 73.14% | 26.86% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 63 | 58.73% | 41.27% |
| Indica I | 368 | 73.10% | 26.90% |
| Indica II | 203 | 78.33% | 21.67% |
| Indica Intermediate | 207 | 68.12% | 31.88% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222793516 | C->T | INTERGENIC | None |