Detailed information of SNP:
|
SNP ID:
sf0222796153(Gbrowse)
Chromosome: chr02 Position: 22796153 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1395 | 86.88% | 13.12% |
| All Indica | 786 | 78.12% | 21.88% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 57 | 85.96% | 14.04% |
| Indica I | 369 | 79.40% | 20.60% |
| Indica II | 210 | 79.52% | 20.48% |
| Indica Intermediate | 207 | 74.40% | 25.60% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222796153 | G->A | INTERGENIC | None |