Detailed information of SNP:
|
SNP ID:
sf0222809495(Gbrowse)
Chromosome: chr02 Position: 22809495 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1375 | 54.33% | 45.67% |
| All Indica | 789 | 27.63% | 72.37% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 38 | 7.89% | 92.11% |
| Indica I | 375 | 18.40% | 81.60% |
| Indica II | 209 | 37.80% | 62.20% |
| Indica Intermediate | 205 | 34.15% | 65.85% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 37 | 62.16% | 37.84% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222809495 | T->C | LOC_Os02g37820(LOC_Os02g37820.1) | Non-Synonymous SNP |