Detailed information of SNP:
|
SNP ID:
sf0222810211(Gbrowse)
Chromosome: chr02 Position: 22810211 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1374 | 58.01% | 41.99% |
| All Indica | 788 | 30.46% | 69.54% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 37 | 67.57% | 32.43% |
| Indica I | 372 | 19.62% | 80.38% |
| Indica II | 208 | 39.42% | 60.58% |
| Indica Intermediate | 208 | 40.87% | 59.13% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 65.79% | 34.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222810211 | A->G | INTERGENIC | None |