Detailed information of SNP:
|
SNP ID:
sf0222812070(Gbrowse)
Chromosome: chr02 Position: 22812070 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1375 | 54.98% | 45.02% |
| All Indica | 787 | 28.34% | 71.66% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 39 | 10.26% | 89.74% |
| Indica I | 374 | 18.98% | 81.02% |
| Indica II | 210 | 37.62% | 62.38% |
| Indica Intermediate | 203 | 35.96% | 64.04% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 38 | 65.79% | 34.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222812070 | T->C | INTERGENIC | None |