Detailed information of SNP:
|
SNP ID:
sf0222822711(Gbrowse)
Chromosome: chr02 Position: 22822711 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1317 | 95.06% | 4.94% |
| All Indica | 773 | 91.98% | 8.02% |
| All Japonica | 425 | 99.29% | 0.71% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 365 | 98.63% | 1.37% |
| Indica II | 204 | 81.86% | 18.14% |
| Indica Intermediate | 204 | 90.20% | 9.80% |
| Temperate Japonica | 278 | 100.00% | 0.00% |
| Tropical Japonica | 84 | 100.00% | 0.00% |
| Japonica Intermediate | 63 | 95.24% | 4.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222822711 | T->C | INTERGENIC | None |