Detailed information of SNP:
|
SNP ID:
sf0222824484(Gbrowse)
Chromosome: chr02 Position: 22824484 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1204 | 96.76% | 3.24% |
| All Indica | 754 | 100.00% | 0.00% |
| All Japonica | 334 | 88.62% | 11.38% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 357 | 100.00% | 0.00% |
| Indica II | 197 | 100.00% | 0.00% |
| Indica Intermediate | 200 | 100.00% | 0.00% |
| Temperate Japonica | 218 | 83.49% | 16.51% |
| Tropical Japonica | 66 | 100.00% | 0.00% |
| Japonica Intermediate | 50 | 96.00% | 4.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 35 | 97.14% | 2.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222824484 | C->T | INTERGENIC | None |