Detailed information of SNP:
|
SNP ID:
sf0222827586(Gbrowse)
Chromosome: chr02 Position: 22827586 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1404 | 50.07% | 49.93% |
| All Indica | 794 | 75.31% | 24.69% |
| All Japonica | 492 | 8.13% | 91.87% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 374 | 83.16% | 16.84% |
| Indica II | 213 | 62.91% | 37.09% |
| Indica Intermediate | 207 | 73.91% | 26.09% |
| Temperate Japonica | 333 | 6.31% | 93.69% |
| Tropical Japonica | 93 | 4.30% | 95.70% |
| Japonica Intermediate | 66 | 22.73% | 77.27% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 39 | 41.03% | 58.97% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222827586 | A->G | INTERGENIC | None |