Detailed information of SNP:
|
SNP ID:
sf0222827593(Gbrowse)
Chromosome: chr02 Position: 22827593 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 52.05% | 47.95% |
| All Indica | 799 | 26.78% | 73.22% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 17.87% | 82.13% |
| Indica II | 213 | 35.68% | 64.32% |
| Indica Intermediate | 211 | 33.65% | 66.35% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222827593 | A->G | INTERGENIC | None |