Detailed information of SNP:
|
SNP ID:
sf0222829860(Gbrowse)
Chromosome: chr02 Position: 22829860 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 54.27% | 45.73% |
| All Indica | 798 | 83.96% | 16.04% |
| All Japonica | 497 | 2.21% | 97.79% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 83.73% | 16.27% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 210 | 80.00% | 20.00% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222829860 | T->C | INTERGENIC | None |