Detailed information of SNP:
|
SNP ID:
sf0222836378(Gbrowse)
Chromosome: chr02 Position: 22836378 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 52.34% | 47.66% |
| All Indica | 795 | 19.12% | 80.88% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 65 | 90.77% | 9.23% |
| Indica I | 374 | 17.11% | 82.89% |
| Indica II | 212 | 15.09% | 84.91% |
| Indica Intermediate | 209 | 26.79% | 73.21% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 64.10% | 35.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222836378 | C->T | INTERGENIC | None |