Detailed information of SNP:
|
SNP ID:
sf0222846407(Gbrowse)
Chromosome: chr02 Position: 22846407 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 52.90% | 47.10% |
| All Indica | 798 | 82.46% | 17.54% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 83.96% | 16.04% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 211 | 74.41% | 25.59% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 40 | 45.00% | 55.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222846407 | G->A | INTERGENIC | None |