Detailed information of SNP:
|
SNP ID:
sf0222848425(Gbrowse)
Chromosome: chr02 Position: 22848425 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 53.25% | 46.75% |
| All Indica | 797 | 82.69% | 17.31% |
| All Japonica | 496 | 1.41% | 98.59% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 83.42% | 16.58% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 210 | 75.71% | 24.29% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 67 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 40 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222848425 | A->G | INTERGENIC | None |