Detailed information of SNP:
|
SNP ID:
sf0222850590(Gbrowse)
Chromosome: chr02 Position: 22850590 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 53.28% | 46.72% |
| All Indica | 798 | 82.83% | 17.17% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 84.00% | 16.00% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 210 | 75.24% | 24.76% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222850590 | G->A | INTERGENIC | None |