Detailed information of SNP:
|
SNP ID:
sf0222851387(Gbrowse)
Chromosome: chr02 Position: 22851387 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1384 | 60.91% | 39.09% |
| All Indica | 771 | 32.94% | 67.06% |
| All Japonica | 490 | 98.57% | 1.43% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 359 | 29.25% | 70.75% |
| Indica II | 205 | 33.66% | 66.34% |
| Indica Intermediate | 207 | 38.65% | 61.35% |
| Temperate Japonica | 333 | 99.40% | 0.60% |
| Tropical Japonica | 91 | 94.51% | 5.49% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222851387 | G->T | INTERGENIC | None |