Detailed information of SNP:
|
SNP ID:
sf0222852962(Gbrowse)
Chromosome: chr02 Position: 22852962 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 53.71% | 46.29% |
| All Indica | 797 | 83.06% | 16.94% |
| All Japonica | 496 | 2.02% | 97.98% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 83.42% | 16.58% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 210 | 77.14% | 22.86% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 67 | 5.97% | 94.03% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222852962 | C->T | INTERGENIC | None |