Detailed information of SNP:
|
SNP ID:
sf0222853094(Gbrowse)
Chromosome: chr02 Position: 22853094 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 53.81% | 46.19% |
| All Indica | 798 | 83.08% | 16.92% |
| All Japonica | 496 | 2.22% | 97.78% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 83.16% | 16.84% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 211 | 77.25% | 22.75% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 67 | 5.97% | 94.03% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222853094 | C->T | INTERGENIC | None |