Detailed information of SNP:
|
SNP ID:
sf0222857963(Gbrowse)
Chromosome: chr02 Position: 22857963 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 59.42% | 40.58% |
| All Indica | 799 | 87.86% | 12.14% |
| All Japonica | 496 | 9.88% | 90.12% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 85.60% | 14.40% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 6.87% | 93.13% |
| Tropical Japonica | 93 | 6.45% | 93.55% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222857963 | T->C | INTERGENIC | None |