Detailed information of SNP:
|
SNP ID:
sf0222858645(Gbrowse)
Chromosome: chr02 Position: 22858645 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 55.76% | 44.24% |
| All Indica | 797 | 87.20% | 12.80% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 373 | 86.06% | 13.94% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222858645 | T->C | INTERGENIC | None |