Detailed information of SNP:
|
SNP ID:
sf0222859078(Gbrowse)
Chromosome: chr02 Position: 22859078 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 55.64% | 44.36% |
| All Indica | 798 | 87.22% | 12.78% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 86.13% | 13.87% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 210 | 87.62% | 12.38% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222859078 | A->G | INTERGENIC | None |