Detailed information of SNP:
|
SNP ID:
sf0222859594(Gbrowse)
Chromosome: chr02 Position: 22859594 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 55.96% | 44.04% |
| All Indica | 796 | 87.31% | 12.69% |
| All Japonica | 493 | 1.62% | 98.38% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 85.83% | 14.17% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 209 | 88.52% | 11.48% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 64 | 3.12% | 96.88% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222859594 | G->A | INTERGENIC | None |