Detailed information of SNP:
|
SNP ID:
sf0222873754(Gbrowse)
Chromosome: chr02 Position: 22873754 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 55.79% | 44.21% |
| All Indica | 798 | 87.22% | 12.78% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 85.87% | 14.13% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 210 | 87.14% | 12.86% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 40 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222873754 | T->C | LOC_Os02g37856(LOC_Os02g37856.1) | INTRON |