Detailed information of SNP:
SNP ID:
sf0222881544(Gbrowse)
Chromosome: chr02 Position: 22881544 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1418 | 96.61% | 3.39% |
All Indica | 799 | 98.87% | 1.13% |
All Japonica | 496 | 99.80% | 0.20% |
Aus | 67 | 49.25% | 50.75% |
Indica I | 375 | 100.00% | 0.00% |
Indica II | 213 | 98.12% | 1.88% |
Indica Intermediate | 211 | 97.63% | 2.37% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 67 | 98.51% | 1.49% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0222881544 | T->C | LOC_Os02g37870(LOC_Os02g37870.1) | INTRON |