Detailed information of SNP:
|
SNP ID:
sf0222891135(Gbrowse)
Chromosome: chr02 Position: 22891135 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 97.32% | 2.68% |
| All Indica | 799 | 95.37% | 4.63% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 84.98% | 15.02% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222891135 | G->A | LOC_Os02g37880(LOC_Os02g37880.3) | Non-Synonymous SNP |
| sf0222891135 | G->A | LOC_Os02g37880(LOC_Os02g37880.2) | Non-Synonymous SNP |
| sf0222891135 | G->A | LOC_Os02g37880(LOC_Os02g37880.1) | Non-Synonymous SNP |