Detailed information of SNP:
|
SNP ID:
sf0222891192(Gbrowse)
Chromosome: chr02 Position: 22891192 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 96.54% | 3.46% |
| All Indica | 799 | 98.75% | 1.25% |
| All Japonica | 495 | 99.80% | 0.20% |
| Aus | 67 | 49.25% | 50.75% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222891192 | T->A | LOC_Os02g37880(LOC_Os02g37880.3) | UTR_3_PRIME |
| sf0222891192 | T->A | LOC_Os02g37880(LOC_Os02g37880.2) | UTR_3_PRIME |
| sf0222891192 | T->A | LOC_Os02g37880(LOC_Os02g37880.1) | UTR_3_PRIME |