Detailed information of SNP:



SNP ID: sf0222905676(Gbrowse)

Chromosome: chr02

Position: 22905676
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1418 97.39% 2.61%
All Indica798 95.61% 4.39%
All Japonica497 99.80% 0.20%
Aus67 100.00% 0.00%
Indica I374 100.00% 0.00%
Indica II213 85.92% 14.08%
Indica Intermediate211 97.63% 2.37%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 98.53% 1.47%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 97.62% 2.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0222905676 T->C LOC_Os02g37910(LOC_Os02g37910.1) INTRON