Detailed information of SNP:
|
SNP ID:
sf0222920229(Gbrowse)
Chromosome: chr02 Position: 22920229 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1241 | 64.14% | 35.86% |
| All Indica | 767 | 95.96% | 4.04% |
| All Japonica | 356 | 2.25% | 97.75% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 355 | 97.18% | 2.82% |
| Indica II | 206 | 97.09% | 2.91% |
| Indica Intermediate | 206 | 92.72% | 7.28% |
| Temperate Japonica | 227 | 1.32% | 98.68% |
| Tropical Japonica | 72 | 6.94% | 93.06% |
| Japonica Intermediate | 57 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 37 | 51.35% | 48.65% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222920229 | G->T | INTERGENIC | None |