Detailed information of SNP:
|
SNP ID:
sf0222943102(Gbrowse)
Chromosome: chr02 Position: 22943102 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 90.42% | 9.58% |
| All Indica | 797 | 98.75% | 1.25% |
| All Japonica | 489 | 83.64% | 16.36% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 209 | 97.13% | 2.87% |
| Temperate Japonica | 334 | 95.21% | 4.79% |
| Tropical Japonica | 90 | 55.56% | 44.44% |
| Japonica Intermediate | 65 | 63.08% | 36.92% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222943102 | T->C | INTERGENIC | None |