Detailed information of SNP:
|
SNP ID:
sf0222946694(Gbrowse)
Chromosome: chr02 Position: 22946694 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1378 | 93.54% | 6.46% |
| All Indica | 798 | 98.87% | 1.13% |
| All Japonica | 459 | 91.94% | 8.06% |
| Aus | 66 | 46.97% | 53.03% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 323 | 98.14% | 1.86% |
| Tropical Japonica | 79 | 72.15% | 27.85% |
| Japonica Intermediate | 57 | 84.21% | 15.79% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0222946694 | A->G | LOC_Os02g37980(LOC_Os02g37980.1) | INTRON |